Publications
98
Wamhoff, E-C., Ronsard, L., Feldman, J., Knappe, G.A., Hauser, B.M., Romanov, A., Case, J.B., Sanapala, S., Lam, E.C., St. Denis, K.J., Boucau, J., Barczak, A.K., Balazs, A.B., Diamond, M.S., Schmidt, A.G., Lingwood, D., Bathe, M. (2024). Enhancing antibody responses by multivalent antigen display on thymus-independent DNA origami scaffolds. Nature Communications 15: 795.
95
Falkovich, R., Danielson, E.W., Perez de Arce, K., Wamhoff, E-C., Strother, J., Lapteva, A.P., Sheng, M., Cottrell, J.R., Bathe, M. (2023). A synaptic molecular dependency network in knockdown of autism- and schizophrenia-associated genes revealed by multiplexed imaging. Cell Reports, 42: 112430.
94
Wamhoff, E-C., Knappe, G.A., Burds, A.A., Du, R.R., Neun, B., Difilipppantonio, S., Sanders, C., Edmondson, E., Matta, J.L., Dobrovolskaia, M., Bathe, M. (2023). Evaluation of non-modified wireframe DNA origami for acute toxicity and biodistribution in mice. ACS Applied Bio Materials, 6: 1960.
85
Lan, T.C.T., Allan, M.F., Malsick, L.E., Woo, J.Z., Zhu, C., Zhang, F., Khandwala, S., Nyeo, S.S.Y., Sun, Y., Guo, J.U., Bathe, M., Näär, A., Griffiths, A., Rouskin, S. (2022). Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells. Nature Communications, 13: 1128.
79
Lavi, R., Bathe, M., Hosoi, A., Mitra, A., Crawley, E. (2021). The NEET ways of thinking: Implementing them at MIT and assessing their efficacy. Advances in Engineering Education.
78
Bathe, M. (2021). Nanoscale 2D and 3D patterning using programmed DNA assemblies. Novel Patterning Technologies,11610: 1161012.
73
Banal, J.L., Shepherd, T. Y., Berleant, J., Huang, H., Reyes, M., Ackerman, C.M., Blainey, P. C., Bathe, M. (2021). Random access DNA memory using Boolean search in an archival file storage system. Nature Materials, 20: 1272.
71
Hart, S.M., Chen, W.J., Banal, J.L., Bricker, W.P., Dodin, A., Markova, L., Vyborna, Y., Willard, A.P., Häner, R., Bathe, M., Schlau-Cohen, G. S. (2020). Engineering couplings for exciton transport using synthetic DNA scaffolds. Chem, 7: 752.
67
Pisharady, K.P., Eberly, L.E., Cheong, I., Manousakis, G., Guliani, G., Clark, H.B., Bathe, M., Walk, D., Lenglet, C. (2020). Tract-specific analysis improves sensitivity of spinal cord diffusion MRI to cross-sectional and longitudinal changes in amyotrophic lateral sclerosis. Communications Biology, 3: 370.
65
Hart, S. M., Banal, J. L., Bathe, M., and Schlau-Cohen, G.S. (2020). Identification of non-radiative decay pathways in cy3. The Journal of Physical Chemistry Letters, 11: 5000.
64
Jun, H., Wang, X., Bricker, W.P., & Bathe, M. (2019). Automated sequence design of 2D wireframe DNA origami with honeycomb edges. Nature Communications, 10: 5419.
63
Guo, S-M., Veneziano, R., Gordonov, S., Li, L., Danielson, E., Perez de Arce, K., Park, D., Kulesa, A.B., Wamhoff, E-C., Blainey, P.C., Boyden, E.S., Cottrell, J.R., Bathe, M. (2019). Multiplexed and high-throughput neuronal fluorescence imaging with diffusible probes. Nature Communications, 10: 4377.
57
Bathe, M., Chrisey, L.A., Herr, D.J., Lin, Q., Rasic, D., Woolley, A.T., Zadegan, R., Zhirnov, V.V. (2019). Roadmap on biological pathways for electronic nanofabrication and materials. Nano Futures, 3: 012001.
54
Bathe, M., Guo, S-M., Li, L., Veneziano, R., Gordonov, S., Cottrell, J.C. (2018). Multiplexed imaging of neuronal synapses using nucleic acid probe exchange. Protocol Exchange, doi:10.1038/protex.2018.066.
52
Bathe, M. and Rothemund, P. (2017). DNA Nanotechnology: A foundation for programmable nanoscale materials. MRS Bulletin, 42: 882.
51
Boulais, E., Sawaya, N., Veneziano, R., Andreoni, A., Banal, J.L., Kondo, T., Mandal, S., Lin, S., Schlau-Cohen, G.S., Woodbury, N., Yan, H., Aspuru-Guzik, A., Bathe, M. (2018). Programmed coherent coupling in a synthetic DNA-based excitonic circuit. Nature Materials, 17: 159.
35
Klingner, C., Cherian, A.V., Diesinger, P.M., Aufschnaiter, R., Maghelli, N., Keil, T., Beck, G., Tolic-Norrelykke, I., Bathe, M., and Wedlich-Soldner, R. (2014). An isotropic acto-myosin network promotes organization of the apical cell cortex in epithelial cells. The Journal of Cell Biology, 207: 107.
29
Subramanian, V., Mazumder, A., Surface, L.E., Butty, V., Fields, P.A., Alwan, A., Torrey, L., Thai, K.K., Levine, S., Bathe, M., Boyer, L. (2013). H2A.Z acidic patch couples chromatin dynamics to regulation of developmental gene expression programs during lineage commitment. PLoS Genetics, 9: e1003725.
24
Schmidt, J.C., Arthanari, H., Boeszoermenyi, A., Dashkevich, N.M., Wilson-Kubalek, E., Monnier, N., Markus, M., Oberer, M., Milligan, R., Bathe, M., Wagner, G., Grishchuk, E.L., Cheeseman, I.M. (2012). The kinetochore-bound Ska1 complex tracks depolymerizing microtubules by binding to curved protofilaments. Developmental Cell, 23: 968.